STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspACOG1027 Aspartate ammonia-lyase. (463 aa)    
Predicted Functional Partners:
AnsA
COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D.
  
 
 0.969
RAM_24430
COG1794 Aspartate racemase.
   
 0.936
NadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
  
 0.927
ArgH
COG0165 Argininosuccinate lyase.
     
 0.910
argH
COG0165 Argininosuccinate lyase.
     
 0.910
PurB
COG0015 Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.910
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.910
AsnB
COG0367 Asparagine synthase (glutamine-hydrolyzing).
     
 0.904
AsnB-2
COG0367 Asparagine synthase (glutamine-hydrolyzing).
     
 0.904
AsnB-3
COG0367 Asparagine synthase (glutamine-hydrolyzing).
     
 0.904
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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