STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_10985Ykud domain-containing protein; COG1376 Uncharacterized protein conserved in bacteria. (394 aa)    
Predicted Functional Partners:
RAM_08470
vitamin-B12 independent methionine synthase.
  
     0.666
DacB
COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
 
  
 0.605
RAM_45290
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
 
   
 0.561
crgA
Putative septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
  
   
 0.549
RAM_46230
Hypothetical protein.
  
     0.536
RAM_47645
Hypothetical protein; COG5650 Predicted integral membrane protein.
  
     0.510
RAM_10990
Patatin-like phospholipase; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
  
    0.509
RAM_10745
Hypothetical protein.
  
     0.498
DedA
COG0586 Uncharacterized membrane-associated protein.
  
    0.489
RAM_06250
Hypothetical protein.
  
     0.448
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.