STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11255COG0438 Glycosyltransferase. (387 aa)    
Predicted Functional Partners:
RAM_27110
Phosphatidylinositol alpha-mannosyltransferase; COG0438 Glycosyltransferase.
  
     0.742
RAM_27105
Hypothetical protein.
 
     0.706
RAM_41015
Hypothetical protein.
  
     0.684
HtrB
COG1560 Lauroyl/myristoyl acyltransferase.
 
  
 0.666
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
   
 0.553
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.552
RAM_11250
NLP/P60-family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
       0.550
RAM_18145
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
   
 0.531
RAM_32775
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
   
 0.531
RAM_45275
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.512
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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