STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11350Hypothetical protein. (423 aa)    
Predicted Functional Partners:
RAM_11355
Hypothetical protein.
 
   
 0.869
RAM_11345
Hypothetical protein.
       0.777
RAM_11360
Hypothetical protein.
       0.777
RAM_02150
Hypothetical protein.
 
 
 
 0.730
RAM_47895
Probable ADP-ribosylglycohydrolase.
  
     0.724
RAM_47880
NAD:arginine ADP-ribosyltransferase with a RelA/SpoT domain; COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases.
  
     0.674
RAM_01110
Hypothetical protein.
  
 
   0.664
RAM_21300
Hypothetical protein; Belongs to the WXG100 family.
  
   
 0.634
RAM_03130
Hypothetical protein.
  
     0.590
RAM_44960
COG1309 Transcriptional regulator.
  
     0.584
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.