STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11355Hypothetical protein. (437 aa)    
Predicted Functional Partners:
RAM_11350
Hypothetical protein.
 
   
 0.869
RAM_11430
Integral membrane protein.
 
   
 0.775
RAM_11345
Hypothetical protein.
       0.773
RAM_11360
Hypothetical protein.
       0.773
RAM_05290
COG1396 Predicted transcriptional regulators.
  
     0.765
RAM_11425
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
 
     0.761
RAM_11445
Hypothetical protein.
  
 
 0.741
RAM_01110
Hypothetical protein.
  
     0.740
RAM_45695
Hypothetical protein.
  
   
 0.740
RAM_21645
Copper binding protein of plastocyanin/azurin family; COG3794 Plastocyanin.
  
     0.736
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.