STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11385COG5640 Secreted trypsin-like serine protease. (225 aa)    
Predicted Functional Partners:
RAM_10435
COG5640 Secreted trypsin-like serine protease.
  
     0.740
RAM_13015
COG5640 Secreted trypsin-like serine protease.
  
     0.731
RAM_00295
Esterase; COG5640 Secreted trypsin-like serine protease.
  
     0.673
RAM_21210
COG2866 Predicted carboxypeptidase.
  
 
 0.561
RAM_39810
Hypothetical protein.
    
 0.546
RAM_37885
Secreted esterase.
  
     0.536
RAM_33850
COG4826 Serine protease inhibitor; Belongs to the serpin family.
 
 
 0.493
RAM_11390
Hypothetical protein.
       0.474
RAM_11395
Hypothetical protein.
       0.474
RAM_06730
Peptidase.
  
     0.452
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.