Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RAM_00915 | kptA | RAM_00915 | RAM_11510 | Phage tail assembly-like protein; COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.420 |
| RAM_08295 | RAM_39425 | RAM_08295 | RAM_39425 | COG3236 Uncharacterized protein conserved in bacteria. | Hypothetical protein; COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1. | 0.712 |
| RAM_08295 | RAM_45555 | RAM_08295 | RAM_45555 | COG3236 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.456 |
| RAM_08295 | kptA | RAM_08295 | RAM_11510 | COG3236 Uncharacterized protein conserved in bacteria. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.497 |
| RAM_11515 | RAM_11520 | RAM_11515 | RAM_11520 | COG0789 Predicted transcriptional regulators. | COG3959 Transketolase, N-terminal subunit. | 0.568 |
| RAM_11515 | RAM_11525 | RAM_11515 | RAM_11525 | COG0789 Predicted transcriptional regulators. | COG3958 Transketolase, C-terminal subunit. | 0.568 |
| RAM_11515 | RAM_11530 | RAM_11515 | RAM_11530 | COG0789 Predicted transcriptional regulators. | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.551 |
| RAM_11515 | kptA | RAM_11515 | RAM_11510 | COG0789 Predicted transcriptional regulators. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.689 |
| RAM_11520 | RAM_11515 | RAM_11520 | RAM_11515 | COG3959 Transketolase, N-terminal subunit. | COG0789 Predicted transcriptional regulators. | 0.568 |
| RAM_11520 | RAM_11525 | RAM_11520 | RAM_11525 | COG3959 Transketolase, N-terminal subunit. | COG3958 Transketolase, C-terminal subunit. | 0.998 |
| RAM_11520 | RAM_11530 | RAM_11520 | RAM_11530 | COG3959 Transketolase, N-terminal subunit. | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.781 |
| RAM_11520 | kptA | RAM_11520 | RAM_11510 | COG3959 Transketolase, N-terminal subunit. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.493 |
| RAM_11525 | RAM_11515 | RAM_11525 | RAM_11515 | COG3958 Transketolase, C-terminal subunit. | COG0789 Predicted transcriptional regulators. | 0.568 |
| RAM_11525 | RAM_11520 | RAM_11525 | RAM_11520 | COG3958 Transketolase, C-terminal subunit. | COG3959 Transketolase, N-terminal subunit. | 0.998 |
| RAM_11525 | RAM_11530 | RAM_11525 | RAM_11530 | COG3958 Transketolase, C-terminal subunit. | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.781 |
| RAM_11525 | kptA | RAM_11525 | RAM_11510 | COG3958 Transketolase, C-terminal subunit. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.493 |
| RAM_11530 | RAM_11515 | RAM_11530 | RAM_11515 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | COG0789 Predicted transcriptional regulators. | 0.551 |
| RAM_11530 | RAM_11520 | RAM_11530 | RAM_11520 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | COG3959 Transketolase, N-terminal subunit. | 0.781 |
| RAM_11530 | RAM_11525 | RAM_11530 | RAM_11525 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | COG3958 Transketolase, C-terminal subunit. | 0.781 |
| RAM_11530 | kptA | RAM_11530 | RAM_11510 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.485 |
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