STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11580Hypothetical protein. (113 aa)    
Predicted Functional Partners:
RAM_11585
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.670
RAM_11575
COG1309 Transcriptional regulator.
 
     0.652
RAM_14625
MutT/NUDIX family protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.
  
     0.468
RAM_25055
Hypothetical protein.
  
     0.467
RAM_37540
Hypothetical protein; COG0510 Predicted choline kinase involved in LPS biosynthesis.
  
     0.461
RAM_11570
Hypothetical protein.
       0.460
RAM_39245
Hypothetical protein.
  
     0.410
RAM_25345
Isomerase.
 
     0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.