STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11600Hypothetical protein. (312 aa)    
Predicted Functional Partners:
MsrA
Peptide-methionine (R)-S-oxide reductase; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.
   
 
 0.810
msrA
Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.809
RAM_02545
Cytochrome C biogenesis protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.797
RAM_45300
Redoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.797
RAM_46215
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.797
RAM_47200
NHL repeat-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.797
RAM_11590
Pyridoxamine 5'-phosphate oxidase.
       0.532
RAM_11595
COG3554 Uncharacterized protein conserved in bacteria.
       0.532
RAM_00950
Hypothetical protein.
  
 
 0.519
RAM_05470
Hypothetical protein.
  
 
 0.519
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.