STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11705Hypothetical protein. (411 aa)    
Predicted Functional Partners:
RAM_33315
Hypothetical protein; COG0428 Predicted divalent heavy-metal cations transporter.
  
     0.594
RAM_06380
COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol.
  
     0.556
RAM_17905
Hypothetical protein.
  
     0.524
RAM_33140
Beta-lactamase class B; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
     0.515
RAM_36275
Chitinase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
     0.505
RAM_24730
Chitinase.
  
     0.472
RAM_01320
Hypothetical protein.
  
     0.469
RAM_33125
Hypothetical protein.
  
     0.467
GlnA3-1
Glutamine synthetase-like protein; COG0174 Glutamine synthetase.
       0.459
RAM_19305
Hypothetical protein.
  
     0.456
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.