STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11720Amidohydrolase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold. (374 aa)    
Predicted Functional Partners:
GlnA3-1
Glutamine synthetase-like protein; COG0174 Glutamine synthetase.
   
 0.959
GlnA3-2
Glutamine synthetase-like protein; COG0174 Glutamine synthetase.
   
 0.907
RAM_11715
COG0531 Amino acid transporters.
 
   
 0.889
RAM_11725
N-acyl-L-amino acid amidohydrolase; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
 
     0.819
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.718
GlnA2
COG0174 Glutamine synthetase.
    
 0.538
RAM_25320
COG1253 Hemolysins and related proteins containing CBS domains.
     
 0.449
RAM_31505
Hypothetical protein.
  
     0.435
RAM_38565
Carboxymuconolactone decarboxylase.
 
     0.430
RAM_11705
Hypothetical protein.
 
     0.428
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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