STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11750Hypothetical protein. (1101 aa)    
Predicted Functional Partners:
RAM_30580
Hypothetical protein.
    
 0.757
RAM_19155
Hypothetical protein.
  
     0.744
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
    
 0.705
RAM_20955
Large ATP-binding protein; COG5635 Predicted NTPase (NACHT family).
 
     0.667
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.648
RAM_21115
Hypothetical protein.
  
     0.630
RAM_14200
Hypothetical protein.
  
     0.619
RAM_39570
Large ATP-binding protein; COG5635 Predicted NTPase (NACHT family).
 
     0.603
RAM_37780
SGNH hydrolase containing a LamG-like domain; COG3209 Rhs family protein.
  
     0.591
RAM_17480
Hypothetical protein.
  
 0.565
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.