STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11805Hypothetical protein. (122 aa)    
Predicted Functional Partners:
RAM_11800
COG0515 Serine/threonine protein kinase.
     
 0.671
RAM_12500
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
      
 0.634
RAM_46365
Hypothetical protein.
  
     0.586
RAM_11795
Hypothetical protein.
       0.527
RAM_14595
COG1316 Transcriptional regulator.
   
    0.525
RAM_13430
Hypothetical protein.
  
   
 0.519
RAM_13250
Hypothetical protein.
  
     0.499
RAM_15045
Hypothetical protein; COG0762 Predicted integral membrane protein.
  
     0.492
RAM_45270
Hypothetical protein.
  
     0.462
HolA
Hypothetical protein; COG1466 DNA polymerase III, delta subunit.
  
     0.450
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.