STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11815Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases. (259 aa)    
Predicted Functional Partners:
CrtI
COG1233 Phytoene dehydrogenase and related proteins.
       0.786
RAM_11830
COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.786
CrtB
COG1562 Phytoene/squalene synthetase.
       0.775
Hmd-5
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.755
RAM_14790
Hypothetical protein.
  
   
 0.743
RAM_42925
Hypothetical protein.
  
   
 0.742
RAM_15385
Hypothetical protein.
  
     0.741
RAM_25250
Hypothetical protein.
  
     0.740
RAM_35585
Hypothetical protein; COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase.
  
   
 0.738
RAM_30420
Hypothetical protein.
 
    0.735
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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