STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11880Hypothetical protein; COG0460 Homoserine dehydrogenase. (353 aa)    
Predicted Functional Partners:
RAM_47730
Hypothetical protein.
  
    0.709
RAM_00245
Hypothetical protein.
  
    0.612
RAM_01665
Hypothetical protein.
  
     0.586
RAM_46455
Deacetylase; COG3233 Predicted deacetylase.
  
     0.571
RAM_29910
Hypothetical protein.
  
     0.550
RAM_26530
Two-component system response regulator; COG2203 FOG: GAF domain.
  
     0.548
RAM_26570
Hypothetical protein; COG2203 FOG: GAF domain.
  
     0.540
RAM_31920
Hypothetical protein; COG3707 Response regulator with putative antiterminator output domain.
  
     0.524
RAM_11875
Hypothetical protein.
 
    0.521
RAM_33580
Hypothetical protein; COG3707 Response regulator with putative antiterminator output domain.
  
     0.518
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.