STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11915Hypothetical protein. (64 aa)    
Predicted Functional Partners:
DnaK
COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.
       0.655
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.591
nucS
Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
   
 0.562
RAM_15045
Hypothetical protein; COG0762 Predicted integral membrane protein.
  
     0.540
HolA
Hypothetical protein; COG1466 DNA polymerase III, delta subunit.
  
     0.523
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
      
 0.497
RAM_39780
COG0590 Cytosine/adenosine deaminases.
      
 0.497
recX
Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family.
       0.476
RAM_06310
Hypothetical protein.
  
     0.471
RAM_05755
COG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
  
     0.451
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.