STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11935Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. (420 aa)    
Predicted Functional Partners:
RAM_19240
Hypothetical protein.
  
     0.686
RAM_17945
Hypothetical protein.
  
     0.640
RAM_22160
Hypothetical protein.
  
     0.622
RAM_16700
COG2940 Proteins containing SET domain.
  
     0.617
RAM_11940
Hypothetical protein.
       0.592
RAM_37925
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
     0.547
RAM_28675
Carbohydrate-binding protein; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
     0.544
RAM_02800
Hypothetical protein.
  
     0.524
RAM_28305
COG2124 Cytochrome P450.
  
     0.508
RAM_17025
Hypothetical protein.
  
     0.466
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.