STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11955Hypothetical protein. (96 aa)    
Predicted Functional Partners:
RAM_11960
Hypothetical protein.
 
   
 0.945
sdhA-2
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
   
 0.797
SdhB-2
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
 
   
 0.744
SdhC
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
  
   
 0.676
RAM_03905
Hypothetical protein.
  
     0.623
RAM_32385
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.612
RAM_12440
Hypothetical protein.
  
     0.594
RAM_13255
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.594
SdhD
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
  
   
 0.586
RAM_15110
Hypothetical protein.
  
     0.561
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.