STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11960Hypothetical protein. (274 aa)    
Predicted Functional Partners:
SdhB-2
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
 
 
 
 0.960
RAM_11955
Hypothetical protein.
 
   
 0.945
sdhA-2
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
 
 
 0.941
SdhB
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
   
 
 0.715
SdhB-3
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
   
 
 0.708
RAM_38155
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
  
     0.449
Eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
       0.444
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
       0.444
sdhA
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
 
 0.442
sdhA-3
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
 
 0.442
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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