STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_11960Hypothetical protein. (274 aa)    
Predicted Functional Partners:
SdhB-2
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
 
 
 
 0.970
sdhA-2
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
 
 
 0.952
RAM_11955
Hypothetical protein.
 
   
 0.949
SdhB
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
   
 
 0.789
SdhB-3
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
   
 
 0.787
sdhA
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
 
 0.542
sdhA-3
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
 
 0.542
RAM_38155
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
  
     0.449
SdhD
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
      
 0.445
SdhC
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
      
 0.445
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.