STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12060Hypothetical protein. (441 aa)    
Predicted Functional Partners:
RAM_12055
Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase.
 
     0.820
Pel-2
Pectate lyase.
  
   
 0.688
RAM_26230
Hypothetical protein.
  
     0.618
AbfA
alpha-N-arabinofuranosidase.
 
     0.604
RAM_23645
Hypothetical protein.
  
     0.598
RAM_38140
Hypothetical protein.
  
     0.596
RAM_12075
Endoglycosylceramidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
    0.592
RAM_46670
Hypothetical protein.
  
   
 0.590
RAM_01425
Hypothetical protein.
  
   
 0.587
RAM_23075
Hypothetical protein.
  
   
 0.577
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.