STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12070COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (470 aa)    
Predicted Functional Partners:
RAM_26385
Endo-1,4-beta-glucanase; COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
  
  
 0.694
RAM_38110
COG3867 Arabinogalactan endo-1,4-beta-galactosidase.
 
  
 0.692
RAM_18710
COG3867 Arabinogalactan endo-1,4-beta-galactosidase.
  
 0.684
RAM_38210
Hypothetical protein.
 
     0.683
XynA
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.656
RAM_11435
COG5520 O-Glycosyl hydrolase.
 
  
 0.650
RAM_38140
Hypothetical protein.
  
  
 0.627
AbfA-9
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
 
  
 0.610
AbnA
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
  
     0.606
RAM_12075
Endoglycosylceramidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.605
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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