STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12075Endoglycosylceramidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (588 aa)    
Predicted Functional Partners:
RAM_40505
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
  
     0.675
RAM_16145
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
  
     0.647
RAM_12070
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
     
 0.605
RAM_16785
Hypothetical protein.
  
     0.599
RAM_07740
Unsaturated glucuronyl hydrolase.
  
 
 0.581
RAM_12060
Hypothetical protein.
  
     0.575
RAM_16790
COG1309 Transcriptional regulator.
  
     0.574
RAM_24540
COG1846 Transcriptional regulators.
  
     0.545
RAM_16085
ABC transporter substrate-binding protein.
  
     0.518
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.502
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.