STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12160Hypothetical protein. (338 aa)    
Predicted Functional Partners:
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.738
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
   
 
 0.734
RAM_40055
Hypothetical protein.
 
     0.559
PlsC-6
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.548
RAM_12150
COG1522 Transcriptional regulators.
       0.546
RAM_31315
ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
     0.546
RAM_34985
Hypothetical protein; COG1512 Beta-propeller domains of methanol dehydrogenase type.
  
     0.464
RAM_41060
Lipoprotein.
  
     0.463
RAM_21895
Hypothetical protein.
  
    0.462
RAM_31325
ABC transporter permease; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
     0.441
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.