STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12195Hypothetical protein. (248 aa)    
Predicted Functional Partners:
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.606
RAM_30750
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.531
RAM_12185
Hypothetical protein.
       0.529
RAM_12190
Hypothetical protein.
       0.517
RAM_05140
COG1216 Predicted glycosyltransferases.
  
  
 0.507
RAM_12205
Small multidrug resistance protein; COG2076 Membrane transporters of cations and cationic drugs.
       0.477
RAM_02820
Exopolysaccharide biosynthesis protein.
  
  
 0.467
AcpD
FMN-dependent NADH-azoreductase; COG1182 Acyl carrier protein phosphodiesterase.
       0.467
RAM_14155
Hypothetical protein.
  
  
 0.465
RAM_20895
Hypothetical protein.
  
  
 0.465
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.