STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12210Prolyl oligopeptidase; COG1505 Serine proteases of the peptidase family S9A. (670 aa)    
Predicted Functional Partners:
RAM_12215
Hypothetical protein; COG2321 Predicted metalloprotease.
       0.551
RAM_13660
Dipeptidyl-peptidase 4; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
  
 0.471
RAM_17585
Glutamate carboxypeptidase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
   
  
 0.464
Dcp
Peptidyl-dipeptidase Dcp; COG0339 Zn-dependent oligopeptidases.
  
 
 0.445
RAM_17580
D-glutamate deacylase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
      
 0.420
RAM_15115
COG4805 Uncharacterized protein conserved in bacteria.
 
     0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.