STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12250Hypothetical protein. (223 aa)    
Predicted Functional Partners:
PepX
X-prolyl-dipeptidyl aminopeptidase; COG2936 Predicted acyl esterases.
       0.773
RAM_12255
FAD linked oxidase-like protein; COG0277 FAD/FMN-containing dehydrogenases.
  
    0.601
RAM_12240
Hypothetical protein.
       0.550
RAM_03020
Hypothetical protein.
  
     0.448
obgE
GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
 
    0.443
RAM_31520
Prothage CP4-57 regulatory.
      
 0.440
RAM_01000
Hypothetical protein.
  
     0.434
RAM_30285
COG1396 Predicted transcriptional regulators.
  
     0.422
RAM_00745
Hypothetical protein.
  
     0.420
RAM_32835
Hypothetical protein.
  
     0.409
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.