STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12270COG0739 Membrane proteins related to metalloendopeptidases. (284 aa)    
Predicted Functional Partners:
RAM_45425
Penicillin binding protein; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.554
RAM_12260
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
     
 0.532
RAM_12265
COG4585 Signal transduction histidine kinase.
       0.529
RAM_09250
Glycosyl transferase family 51; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.501
RAM_10340
Protease; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
  
 0.470
RAM_12275
Hypothetical protein.
       0.463
FtsX
Cell division transport system permease protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.433
RAM_26685
Hypothetical protein.
  
     0.427
Pbp
Penicillin binding protein; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.423
RAM_31540
Hypothetical protein.
 
 
 
 0.411
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.