STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SseARhodanese-like protein; COG2897 Rhodanese-related sulfurtransferase. (281 aa)    
Predicted Functional Partners:
IscS
COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 0.927
SseA-2
Rhodanese-like protein; COG2897 Rhodanese-related sulfurtransferase.
  
  
0.925
NirA
COG0155 Sulfite reductase, beta subunit (hemoprotein); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.923
CysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.
    
 0.908
RAM_42585
Aminotransferase; COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities.
    
 0.906
RAM_06600
FMN reductase; COG0431 Predicted flavoprotein.
     
  0.900
SsuD-7
Alkanesulfonate monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
     
  0.900
RAM_27835
Integral membrane protein.
     
  0.900
RAM_45520
FMN reductase; COG0431 Predicted flavoprotein.
     
  0.900
TauD-3
COG2175 Probable taurine catabolism dioxygenase.
    
  0.900
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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