STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12315COG1960 Acyl-CoA dehydrogenases. (340 aa)    
Predicted Functional Partners:
RAM_12320
COG1960 Acyl-CoA dehydrogenases.
     0.950
RAM_12760
COG1960 Acyl-CoA dehydrogenases.
     0.778
RAM_12770
Hypothetical protein.
 
 0.776
FixA
COG2086 Electron transfer flavoprotein, beta subunit.
 
 
 0.767
RAM_17230
COG1960 Acyl-CoA dehydrogenases.
 
     0.765
RAM_19685
COG1960 Acyl-CoA dehydrogenases.
 
     0.765
RAM_17215
COG1960 Acyl-CoA dehydrogenases.
 
     0.763
RAM_12990
Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase.
 
 
 0.761
RAM_36770
COG1960 Acyl-CoA dehydrogenases.
 
     0.761
FixB
COG2025 Electron transfer flavoprotein, alpha subunit.
 
 
 0.759
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.