STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12345ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component. (282 aa)    
Predicted Functional Partners:
RAM_03075
COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 0.993
RAM_12350
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
 0.971
RAM_12375
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
 0.970
RAM_12355
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
 0.968
RAM_12360
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
 0.968
RAM_12365
ABC transporter substrate-binding protein.
 
 
 0.968
RAM_12370
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
 0.968
RAM_12340
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
0.915
RAM_03090
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
 0.875
RAM_39140
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
 
 0.875
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.