STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12375ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (409 aa)    
Predicted Functional Partners:
RAM_12340
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.976
RAM_12345
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.967
RAM_12350
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
 0.960
RAM_12360
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
 0.958
RAM_12385
Hypothetical protein.
 
    0.931
RAM_12380
Hypothetical protein.
 
    0.913
RAM_03080
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.899
RAM_09040
ABC transporter permease; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.899
RAM_03075
COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
 
 0.894
RAM_12370
ABC transporter substrate-binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
  
0.880
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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