STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12400Hypothetical protein. (325 aa)    
Predicted Functional Partners:
AscD
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
 
 
 0.588
RAM_12405
FAD-dependent oxidoreductase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.586
KorA
COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
  
 0.571
RAM_46915
Hypothetical protein.
  
     0.532
RAM_12395
Aminotransferase; COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
       0.518
RAM_20060
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.484
RAM_46970
Flavohemoprotein; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; Belongs to the globin family.
   
 
 0.474
RAM_46975
Flavohemoprotein; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; Belongs to the globin family.
   
 
 0.474
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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