STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FadD-3COG1022 Long-chain acyl-CoA synthetases (AMP-forming). (598 aa)    
Predicted Functional Partners:
RAM_04760
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein; COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.813
FadD-7
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
0.709
FadD
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
0.703
RAM_37170
acyl-CoA synthetase-related protein; COG1022 Long-chain acyl-CoA synthetases (AMP-forming).
  
  
 
0.700
FadD-4
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
0.696
FadD-6
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
0.695
FadD-2
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
0.682
RAM_41510
COG1960 Acyl-CoA dehydrogenases.
 
 0.675
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.640
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.640
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.