STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12440Hypothetical protein. (135 aa)    
Predicted Functional Partners:
RAM_12445
Metallophosphoesterase; COG2129 Predicted phosphoesterases, related to the Icc protein.
       0.873
RAM_12450
Cyclase/dehydrase.
 
     0.812
RAM_12460
Hypothetical protein.
 
     0.790
RAM_34330
Hypothetical protein.
 
     0.774
RAM_08200
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
  
     0.772
RAM_08285
COG0110 Acetyltransferase (isoleucine patch superfamily).
  
     0.769
RAM_08385
Methyltransferase; COG0500 SAM-dependent methyltransferases.
  
   
 0.768
ArsA
COG0003 Oxyanion-translocating ATPase.
       0.764
RAM_08380
Hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
  
     0.753
RAM_13255
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.745
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.