STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12445Metallophosphoesterase; COG2129 Predicted phosphoesterases, related to the Icc protein. (264 aa)    
Predicted Functional Partners:
RAM_12440
Hypothetical protein.
       0.873
ArsA
COG0003 Oxyanion-translocating ATPase.
 
     0.851
RAM_12450
Cyclase/dehydrase.
       0.828
RAM_12460
Hypothetical protein.
       0.825
Glk
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
       0.798
RAM_27150
Sporulation and cell division protein SsgA.
  
     0.682
RAM_04395
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.648
RAM_43835
Hypothetical protein.
 
     0.633
RAM_38150
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.623
RAM_00655
Hypothetical protein.
  
     0.577
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.