STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12450Cyclase/dehydrase. (144 aa)    
Predicted Functional Partners:
ArsA
COG0003 Oxyanion-translocating ATPase.
  
    0.861
RAM_12460
Hypothetical protein.
       0.858
Glk
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
       0.832
RAM_12440
Hypothetical protein.
 
     0.799
RAM_12445
Metallophosphoesterase; COG2129 Predicted phosphoesterases, related to the Icc protein.
       0.795
RAM_06295
APH/ChoK family kinase; COG0661 Predicted unusual protein kinase.
  
 
 
 0.762
RAM_02190
COG1396 Predicted transcriptional regulators.
  
   
 0.754
RAM_02410
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.747
RAM_02335
Hypothetical protein.
  
     0.738
RAM_45410
COG0003 Oxyanion-translocating ATPase.
 
    0.722
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.