STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12485Hypothetical protein. (170 aa)    
Predicted Functional Partners:
YvaK
Carboxylesterase; COG1647 Esterase/lipase.
       0.814
YbdK
Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
       0.780
RAM_00400
Hypothetical protein.
  
     0.774
RAM_46580
Hypothetical protein.
  
     0.774
RAM_47525
Hypothetical protein.
  
     0.774
RAM_04055
Hypothetical protein.
  
     0.773
RAM_04180
Hypothetical protein.
  
     0.773
RAM_44890
Hypothetical protein.
  
     0.773
RAM_44895
Hypothetical protein.
  
     0.773
RAM_47460
Hypothetical protein.
  
     0.773
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.