STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12500Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. (162 aa)    
Predicted Functional Partners:
RAM_04065
COG1605 Chorismate mutase.
  
     0.773
PlsC-4
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.773
PspA
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
     0.772
RAM_42330
COG3599 Cell division initiation protein.
  
     0.771
RAM_13070
Hypothetical protein.
  
     0.770
RAM_34985
Hypothetical protein; COG1512 Beta-propeller domains of methanol dehydrogenase type.
  
     0.763
RAM_03935
Hypothetical protein.
  
     0.759
RAM_44855
Hypothetical protein.
  
     0.757
RAM_08555
Hypothetical protein.
  
     0.752
RAM_44530
Hypothetical protein.
  
     0.746
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.