STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12515Hypothetical protein. (290 aa)    
Predicted Functional Partners:
RpoE-16
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.862
RAM_41925
NTPase-like protein; COG1192 ATPases involved in chromosome partitioning.
  
     0.696
RAM_03130
Hypothetical protein.
  
    0.632
RAM_31450
Hypothetical protein.
  
    0.623
HutH-3
COG2986 Histidine ammonia-lyase.
       0.584
RAM_17065
Hypothetical protein.
  
     0.573
RAM_01200
Hypothetical protein.
  
 
   0.559
RAM_33020
Hypothetical protein.
  
     0.558
RAM_21360
Phosphatase.
  
    0.557
RAM_18495
Hypothetical protein.
  
    0.541
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.