STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12565COG1396 Predicted transcriptional regulators. (300 aa)    
Predicted Functional Partners:
RAM_12570
Transcriptional regulator.
 
   
 0.920
RAM_46350
Transcriptional regulator.
 
   
 0.775
RAM_01590
Hypothetical protein.
  
     0.751
RAM_40520
Hypothetical protein.
  
     0.747
RAM_19195
Hypothetical protein; COG0376 Catalase (peroxidase I).
  
     0.743
RAM_02040
Hypothetical protein; COG3315 O-Methyltransferase involved in polyketide biosynthesis.
  
     0.742
RAM_40525
Hypothetical protein.
  
     0.742
RAM_46555
Hypothetical protein.
  
     0.730
RAM_02035
Hypothetical protein.
  
     0.727
RAM_28265
Hypothetical protein.
  
     0.724
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.