STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12635Hypothetical protein; COG4578 Glucitol operon activator. (108 aa)    
Predicted Functional Partners:
RAM_12640
Hypothetical protein.
       0.846
RAM_02625
Hypothetical protein.
  
     0.729
RAM_34455
Hypothetical protein.
  
     0.715
RAM_35025
Hypothetical protein.
  
     0.711
RAM_00505
Hypothetical protein.
  
    0.708
RAM_03750
Hypothetical protein.
  
     0.690
RAM_00950
Hypothetical protein.
  
     0.674
RAM_31375
Hypothetical protein.
  
     0.671
RAM_03645
Hypothetical protein.
  
     0.668
RAM_47620
Hypothetical protein.
  
     0.662
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.