STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12665Histidine kinase-like ATPase containing nitrate/nitrite sensor domain; COG0642 Signal transduction histidine kinase. (1329 aa)    
Predicted Functional Partners:
RAM_12670
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
 
   
 0.953
RAM_12675
Hypothetical protein.
 
 
 0.900
RAM_12680
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
  
 0.871
RAM_43780
Hypothetical protein.
 
 
 0.815
RAM_30270
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
 0.814
RAM_43765
Hypothetical protein.
 
 
 0.814
RAM_47050
Hypothetical protein.
 
 
 0.814
RAM_32825
Hypothetical protein.
 
 
 0.810
RAM_45770
Hypothetical protein.
 
 
 0.809
RAM_38375
Hypothetical protein.
 
 
 0.808
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.