STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12775Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase. (389 aa)    
Predicted Functional Partners:
RAM_12765
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
 0.997
RAM_12770
Hypothetical protein.
 
 0.996
RAM_12810
3-ketosteroid-delta-1-dehydrogenase; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 0.977
RAM_06815
3-ketosteroid-delta-1-dehydrogenase; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 0.976
RAM_12815
Hypothetical protein; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 0.975
RAM_36890
3-oxosteroid 1-dehydrogenase; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
 0.974
RAM_12760
COG1960 Acyl-CoA dehydrogenases.
 
 0.967
RAM_34920
Hypothetical protein.
  
  
  0.957
RAM_12755
COG1960 Acyl-CoA dehydrogenases.
 
 0.935
RAM_13365
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.896
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.