STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12840Transmembrane protein. (199 aa)    
Predicted Functional Partners:
RAM_27815
Hypothetical protein; COG0778 Nitroreductase.
 
  
 0.846
RAM_24990
Peptidase M50; COG1994 Zn-dependent proteases; Belongs to the peptidase M50B family.
  
    0.693
RAM_27895
Hypothetical protein.
  
  
 0.651
RAM_27855
Hypothetical protein; COG0778 Nitroreductase.
  
  
 0.647
RAM_28415
Hypothetical protein.
  
  
 0.643
RAM_05080
Alpha/beta hydrolase-related protein; COG1073 Hydrolases of the alpha/beta superfamily.
   
    0.632
RAM_08915
COG2312 Erythromycin esterase homolog.
  
    0.619
LacC
Tagatose 6-phosphate kinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).
   
    0.553
FruK
1-phosphofructokinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family.
   
    0.553
FruK-2
1-phosphofructokinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).
   
    0.553
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.