STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12850COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (353 aa)    
Predicted Functional Partners:
RAM_12855
Delta fatty acid desaturase; COG2233 Xanthine/uracil permeases.
     
 0.773
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.569
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.569
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.569
UvrA-2
COG0178 Excinuclease ATPase subunit.
       0.558
RAM_39415
Metallophosphoesterase; COG1408 Predicted phosphohydrolases.
 
    0.500
RAM_12865
Hypothetical protein; COG2207 AraC-type DNA-binding domain-containing proteins.
     
 0.484
RAM_12845
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
       0.476
PssA
COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.434
RAM_12875
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
     
 0.432
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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