STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12875AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (146 aa)    
Predicted Functional Partners:
RAM_12870
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
 
    0.955
RAM_12865
Hypothetical protein; COG2207 AraC-type DNA-binding domain-containing proteins.
 
    
0.713
RAM_31890
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.667
RAM_12880
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.634
RAM_19105
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.613
RAM_04880
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.606
UvrA-2
COG0178 Excinuclease ATPase subunit.
       0.594
RAM_33455
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.582
RAM_19720
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.531
RAM_23905
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.530
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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