STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12885COG0477 Permeases of the major facilitator superfamily. (468 aa)    
Predicted Functional Partners:
RAM_33815
MFS transporter multidrug efflux transporter; COG0477 Permeases of the major facilitator superfamily.
  
  
 0.780
EmrB-2
MFS transporter multidrug resistance protein B; COG0477 Permeases of the major facilitator superfamily.
  
     0.774
EmrB
MFS transporter multidrug resistance protein B; COG0477 Permeases of the major facilitator superfamily.
  
     0.773
RAM_34505
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
  
 0.688
RAM_12880
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.534
RAM_12875
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.441
RAM_12870
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
       0.437
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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