STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12905Hypothetical protein. (263 aa)    
Predicted Functional Partners:
RAM_12910
COG4315 Uncharacterized protein conserved in bacteria.
 
     0.832
RAM_12925
Hypothetical protein.
 
     0.826
RAM_12900
Hypothetical protein.
       0.780
Fer-3
COG1141 Ferredoxin.
       0.778
RAM_12890
Ferredoxin reductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
       0.773
RAM_22275
Hypothetical protein.
 
     0.772
RAM_22450
Hypothetical protein.
 
     0.770
RAM_32875
Hypothetical protein.
 
     0.767
RAM_12920
Hypothetical protein.
 
     0.720
RAM_26180
Hypothetical protein; COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
     0.665
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.