STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12950Metal-dependent hydrolase; COG1228 Imidazolonepropionase and related amidohydrolases. (400 aa)    
Predicted Functional Partners:
RAM_12945
Hypothetical protein.
       0.773
RAM_12940
COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
 
   
 0.659
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.615
HutH
COG2986 Histidine ammonia-lyase.
  
  
 0.474
HutH-2
COG2986 Histidine ammonia-lyase.
  
  
 0.474
HutH-3
COG2986 Histidine ammonia-lyase.
  
  
 0.474
AsnC
Lrp/AsnC family transcriptional regulator.
       0.458
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.