STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_12980tRNA-processing ribonuclease BN; COG1295 Predicted membrane protein. (340 aa)    
Predicted Functional Partners:
RAM_12975
Transglutaminase/protease; COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
       0.632
RAM_08490
ACT domain-containing protein.
 
    0.587
tatB
Sec-independent translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
 
   
 0.519
RAM_39525
Hypothetical protein.
 
     0.477
RAM_43945
Transglycosylase-associated protein.
 
    0.461
RAM_12970
Hypothetical protein; COG0412 Dienelactone hydrolase and related enzymes.
     
 0.459
RAM_19835
Hypothetical protein.
 
     0.458
ManA-2
COG1482 Phosphomannose isomerase.
 
     0.451
RAM_41170
Hypothetical protein.
  
     0.432
RAM_39645
Hypothetical protein.
  
     0.421
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.